CABS-dock: 73bb88b4caf15a4

Project name: 73bb88b4caf15a4

Status: done

submitted: 2026-07-09 05:38:38, status changed: 2026-07-09 10:16:48

Project settings

Protein sequence(s)	GSHSMRYFSTAVSRPGLGEPRYLEVGYVDDTQFVRFDSDAPNPRMEPRARWVEQEGPEYWDRETQRAKGNAQFFRVSLNNLRGYYNQSEAGSHTLQWMSGCYVGPDGRPPRGFMQFGYDGRDYLALNEDLRSWTAVETMAQISKRKMEAAGEAEVQRNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTLKWEP input pdb
Peptide sequence	YSGTINLHF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	73.3404	2.74064	10.2296	201
cluster_2.pdb ( medoid)	70.5613	1.70065	5.35284	120
cluster_3.pdb ( medoid)	46.9727	3.21463	7.26667	151
cluster_4.pdb ( medoid)	45.2614	1.4582	5.21021	66
cluster_5.pdb ( medoid)	35.2624	2.55229	6.60391	90
cluster_6.pdb ( medoid)	13.6026	5.2931	14.6407	72
cluster_7.pdb ( medoid)	11.116	8.18639	36.9152	91
cluster_8.pdb ( medoid)	10.4481	7.17836	16.1814	75
cluster_9.pdb ( medoid)	9.56774	9.09306	41.0016	87
cluster_10.pdb ( medoid)	6.00804	7.82286	25.4083	47