CABS-dock: PEPTIDE23

Project name: PEPTIDE23

Status: done

submitted: 2025-07-02 11:44:27, status changed: 2025-07-02 15:20:13

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	FKNK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	55.9937	2.07166	12.937	116
cluster_2.pdb ( medoid)	23.0522	6.2467	31.7487	144
cluster_3.pdb ( medoid)	17.0808	3.68835	13.1607	63
cluster_4.pdb ( medoid)	15.9245	6.02844	20.7482	96
cluster_5.pdb ( medoid)	15.8685	8.94857	33.0951	142
cluster_6.pdb ( medoid)	14.6948	8.03007	25.0433	118
cluster_7.pdb ( medoid)	14.0924	9.29576	26.3271	131
cluster_8.pdb ( medoid)	10.6175	6.78129	13.8492	72
cluster_9.pdb ( medoid)	10.3647	3.85925	12.5742	40
cluster_10.pdb ( medoid)	8.41161	9.2729	25.771	78