CABS-dock: 77882fe1475fa0c

Project name: 77882fe1475fa0c

Status: done

submitted: 2026-03-18 07:40:38, status changed: 2026-03-18 09:19:17

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	RRRRVQVFGSNTYRR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEEECCCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.1948	3.61503	16.5827	120
cluster_2.pdb ( medoid)	25.8438	6.11366	17.5978	158
cluster_3.pdb ( medoid)	22.204	7.97154	26.0302	177
cluster_4.pdb ( medoid)	19.8719	5.8877	14.9443	117
cluster_5.pdb ( medoid)	15.7797	3.54885	8.74685	56
cluster_6.pdb ( medoid)	14.6395	6.28436	19.5935	92
cluster_7.pdb ( medoid)	9.34301	8.88364	25.8013	83
cluster_8.pdb ( medoid)	9.06131	5.18689	13.6104	47
cluster_9.pdb ( medoid)	8.84001	8.59727	21.0786	76
cluster_10.pdb ( medoid)	7.93804	9.3222	21.5765	74