CABS-dock: FcGR1-3

Project name: FcGR1-3

Status: done

submitted: 2026-07-09 02:29:03, status changed: 2026-07-09 07:36:10

Project settings

Protein sequence(s)	KAVIKLQPPWVSSVFQEESVTLHCEVPGSSSTQWFLNGTAIQTSTPTYHITSASEDDSGEYRCQRGLSGRSDPIQLEVHRGWLLLQVSSRVLTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNMSHSGTYHCSGMMGKHRYTSAGISVTVKELFPAPVLTASVTSPLLEGTPVTLSCETKLLLQRPGLQLYFSFYMMGSKTLRGRDTSSEYQILTARRREDSGLYWCEAATEDGNVLKRSPELELQVLG input pdb
Peptide sequence	DYAQYEDDLAMDWNEA
Simulation mc cycles	50
Peptide secondary structure psipred	CCHHHHHHHCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	19.4544	6.93929	28.3573	135
cluster_2.pdb ( medoid)	17.785	8.37784	27.9937	149
cluster_3.pdb ( medoid)	16.1403	10.4088	34.5946	168
cluster_4.pdb ( medoid)	14.0064	8.49612	39.1058	119
cluster_5.pdb ( medoid)	13.8445	7.0786	25.9643	98
cluster_6.pdb ( medoid)	10.4344	9.96702	29.6919	104
cluster_7.pdb ( medoid)	8.1795	5.99058	26.9216	49
cluster_8.pdb ( medoid)	7.47263	11.241	28.9375	84
cluster_9.pdb ( medoid)	3.35732	17.5735	40.9709	59
cluster_10.pdb ( medoid)	1.99555	17.539	35.0332	35