CABS-dock: 77e7452382010f5

Project name: 77e7452382010f5

Status: done

submitted: 2025-12-31 15:51:18, status changed: 2025-12-31 18:43:33

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	NPVTGRPLVNIYNCSGVQVGDNNYLTMQQT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCEEEEECCCCCEECCCCEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.0186	3.46452	26.9163	104
cluster_2.pdb ( medoid)	19.4956	4.71901	24.314	92
cluster_3.pdb ( medoid)	17.457	5.9575	24.0265	104
cluster_4.pdb ( medoid)	13.7586	14.391	30.7964	198
cluster_5.pdb ( medoid)	12.4923	9.44585	33.7808	118
cluster_6.pdb ( medoid)	8.53095	8.79152	28.8958	75
cluster_7.pdb ( medoid)	7.56181	11.2407	31.2379	85
cluster_8.pdb ( medoid)	5.37481	15.4424	33.71	83
cluster_9.pdb ( medoid)	4.9911	14.2253	26.6982	71
cluster_10.pdb ( medoid)	4.56925	15.3198	34.653	70