CABS-dock: 7

Project name: 7_sof

Status: done

submitted: 2025-12-05 17:28:08, status changed: 2025-12-05 22:51:30

Project settings

Protein sequence(s)	MSKGEELFTGVVPILVELDGGGGGGGGSSSSSSSSSSPPPPPPQQQQQQQQQQQALMEKQALMEKQALMEKQALMEGGGGGGGGGPPPPPPPQQQQQQQQQQALMEKQALMEKQALMEKQALMEGGGSSSQQQQPPPSSSLLLLMMMMAAAQQQPPPSSSAAAAALMEKQALMEKQALMEKQALMEQQQQQQQQQQQQQQQQPPPSSSSGGGPPPQQQ input pdb
Peptide sequence	LTFEHWW
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	22.3089	5.78244	40.2689	129
cluster_2.pdb ( medoid)	15.5913	6.92693	29.9409	108
cluster_3.pdb ( medoid)	14.7416	10.9214	52.0935	161
cluster_4.pdb ( medoid)	14.6956	10.5473	39.5012	155
cluster_5.pdb ( medoid)	9.56584	12.5446	34.0584	120
cluster_6.pdb ( medoid)	8.1062	9.4989	24.7019	77
cluster_7.pdb ( medoid)	7.53932	12.9985	32.4652	98
cluster_8.pdb ( medoid)	5.99714	9.83803	23.0841	59
cluster_9.pdb ( medoid)	5.02492	12.9355	36.025	65
cluster_10.pdb ( medoid)	1.59965	17.5039	35.8224	28