CABS-dock: 1n0d

Project name: 1n0d

Status: done

submitted: 2025-12-12 14:05:28, status changed: 2025-12-12 15:32:52

Project settings

Protein sequence(s)	SSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHK input pdb
Peptide sequence	CVWEGNKLHC
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	33.5615	5.00573	18.2562	168
cluster_2.pdb ( medoid)	30.5621	3.63195	19.233	111
cluster_3.pdb ( medoid)	25.0642	4.34884	28.9531	109
cluster_4.pdb ( medoid)	21.5373	9.7505	30.8472	210
cluster_5.pdb ( medoid)	11.0584	9.40463	19.1334	104
cluster_6.pdb ( medoid)	10.4195	12.1887	31.3358	127
cluster_7.pdb ( medoid)	9.7727	6.3442	15.7559	62
cluster_8.pdb ( medoid)	5.99416	6.17268	12.4194	37
cluster_9.pdb ( medoid)	4.63549	9.27625	17.6438	43
cluster_10.pdb ( medoid)	2.71645	10.6757	31.1354	29