CABS-dock: 79456c4c87a982d

Project name: 79456c4c87a982d

Status: done

submitted: 2026-03-19 10:57:23, status changed: 2026-03-19 13:09:32

Project settings

Protein sequence(s)	MVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPAMVLSDKTPGSASYRISDNNFVQCGSNCTMIIDGDVVRGRPQDPGAAASPA input pdb
Peptide sequence	KRLVQVFGSNTYRLK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEECCCCCEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	89.5566	0.725798	1.69515	65
cluster_2.pdb ( medoid)	72.6337	1.39054	11.973	101
cluster_3.pdb ( medoid)	23.7266	7.12282	22.7038	169
cluster_4.pdb ( medoid)	23.5078	1.5314	14.3602	36
cluster_5.pdb ( medoid)	19.2405	5.87303	22.0449	113
cluster_6.pdb ( medoid)	18.2234	7.13367	32.4603	130
cluster_7.pdb ( medoid)	13.857	13.062	31.1082	181
cluster_8.pdb ( medoid)	8.89485	12.3667	29.8422	110
cluster_9.pdb ( medoid)	4.70488	12.9653	30.6978	61
cluster_10.pdb ( medoid)	2.83863	11.9776	27.4238	34