CABS-dock: 1073

Project name: 1073

Status: done

submitted: 2026-04-20 16:43:00, status changed: 2026-04-20 22:53:45

Project settings

Protein sequence(s)	MKTISVVTLLCVLPAVVYSTCTVPTMNNAKLTSTETSFNDKQKVTFTCDSGYHSLDPNAVCETDKWKYENPCKKMCTVSDYVSELYDKPLYEVNSTMTLSCNGETKYFRCEEKNGNTSWNDTVTCPNAECQPLQLEHGSCQPVKEKYSFGEYMTINCDVGYEVIGVSYISCTANSWNVIPSCQQKCDIPSLSNGLISGSTFSIGGVIHLSCKSGFTLTGSPSSTCIDGKWNPILPTCVRSNEEFDPVDDGPDDETDLSKLSKDVVQYEQEIESLEATYHIIIMALTIMGVIFLISIIVLVCSCDKNNDQYKFHKLLP input pdb
Peptide sequence	RRKKAAVALLLAILLAL
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHHHHHHHHHHC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	65.0242	1.56865	37.4197	102
cluster_2.pdb ( medoid)	60.8913	1.05105	1.64197	64
cluster_3.pdb ( medoid)	17.7256	11.5652	52.8072	205
cluster_4.pdb ( medoid)	12.352	13.1963	41.73	163
cluster_5.pdb ( medoid)	10.3291	12.973	37.5244	134
cluster_6.pdb ( medoid)	7.5623	12.6946	32.615	96
cluster_7.pdb ( medoid)	5.85815	14.6804	37.5812	86
cluster_8.pdb ( medoid)	5.81977	15.6364	36.8864	91
cluster_9.pdb ( medoid)	1.8348	22.3457	43.1165	41
cluster_10.pdb ( medoid)	0.558612	16.1114	22.9656	9