CABS-dock: 7af3a55370089c0

Project name: 7af3a55370089c0

Status: done

submitted: 2026-03-08 18:45:52, status changed: 2026-03-09 08:34:33

Project settings

Protein sequence(s)	MIKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSMGDTRPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA input pdb
Peptide sequence	GNQTSTTLHLSPYVHYTFRVTAINHY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEEEEEECCCEEEEEEEEEEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	42.8798	0.862878	2.19385	37
cluster_2.pdb ( medoid)	42.324	2.36273	14.6337	100
cluster_3.pdb ( medoid)	21.687	3.22774	11.3648	70
cluster_4.pdb ( medoid)	19.6497	5.59805	40.4343	110
cluster_5.pdb ( medoid)	19.0462	6.03796	26.5033	115
cluster_6.pdb ( medoid)	16.1117	8.99966	27.5102	145
cluster_7.pdb ( medoid)	11.2418	11.7419	43.6566	132
cluster_8.pdb ( medoid)	11.0831	14.0755	29.6325	156
cluster_9.pdb ( medoid)	4.71616	10.8139	25.2075	51
cluster_10.pdb ( medoid)	4.16525	20.1669	57.0109	84