CABS-dock: 7caf53de76f2372

Project name: 7caf53de76f2372

Status: done

submitted: 2026-07-01 10:15:45, status changed: 2026-07-01 13:13:11

Project settings

Protein sequence(s)	LATDKDKLSYSIGADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK input pdb
Peptide sequence	DGWFLV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	42.205	2.7011	18.8741	114
cluster_2.pdb ( medoid)	34.9334	3.95038	15.3581	138
cluster_3.pdb ( medoid)	29.8255	8.14739	38.1669	243
cluster_4.pdb ( medoid)	21.7881	4.58967	9.15035	100
cluster_5.pdb ( medoid)	19.4062	9.17232	35.6867	178
cluster_6.pdb ( medoid)	12.6367	5.38117	11.4412	68
cluster_7.pdb ( medoid)	10.1903	5.10292	9.99633	52
cluster_8.pdb ( medoid)	7.57449	6.73313	16.5374	51
cluster_9.pdb ( medoid)	3.48914	7.16509	12.7868	25
cluster_10.pdb ( medoid)	2.51877	12.3076	28.5834	31