CABS-dock: 7dbfb6cd675a32

Project name: 7dbfb6cd675a32

Status: done

submitted: 2025-05-19 20:03:38, status changed: 2025-05-19 21:12:28

Project settings

Protein sequence(s)	GIVEQCCTSICSLYQLENYCNFVNQHLCGSHLVEALELVCGERGGFYTPK input pdb
Peptide sequence	GPPGAP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	67.2976	1.23333	4.7519	83
cluster_2.pdb ( medoid)	52.4837	2.68655	12.9703	141
cluster_3.pdb ( medoid)	13.3266	8.32921	24.2742	111
cluster_4.pdb ( medoid)	11.4035	6.13844	15.256	70
cluster_5.pdb ( medoid)	10.3202	11.1432	32.4911	115
cluster_6.pdb ( medoid)	8.87696	9.688	24.7461	86
cluster_7.pdb ( medoid)	7.90962	9.86141	29.2816	78
cluster_8.pdb ( medoid)	7.5569	9.52772	24.0188	72
cluster_9.pdb ( medoid)	6.96196	14.0765	32.2779	98
cluster_10.pdb ( medoid)	5.61834	14.4171	34.7363	81