Project name: Control Docking #2 final

Status: done

submitted: 2026-04-14 08:19:22, status changed: 2026-04-14 18:13:53
Project settings
Protein sequence(s) DCIFKKEQAMCLEKIQRANELMGFNDSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDVSRNCTEDGWSEPFPHYFDACGFDEQDYYYLSVKALYTVGYSTSLVTLTTAMVILCRFRKLHCTRNFIHMNLFVSFMLRAISVFIKDWILYAEQDSNHCFISTVECKAVMVFFHYCVVSNYFWLFIEGLYLFTLLVETFFPERRYFYWYTIIGWGTPTVCVTVWATLRLYFDDTGCWDMNDSTALWWVIKGPVVGSIMVNFVLFIGIIVILVQKLQSPDMGGNESSIYLRLARSTLLLIPLFGIHYTVFAFSPENVSKRERLVFELGLGSFQGFVVAVLYCFLNGEVQAEIKRKWRSW input pdb
Peptide sequence HSDGIFTDSYSRYRKQMAVKKYLAAVL
Simulation mc cycles50
Peptide secondary structure psipred CCCCCCCCCHHHHHHHHHHHHHHHHHC
Contact information
298:A 1:PEP 5.0 1.0
300:A 1:PEP 5.0 1.0
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 
Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 41.7267 3.28327 12.1465 137
cluster_2.pdb ( medoid) 40.5833 2.53799 7.90684 103
cluster_3.pdb ( medoid) 38.158 2.62068 7.06441 100
cluster_4.pdb ( medoid) 15.9576 6.95594 27.7647 111
cluster_5.pdb ( medoid) 14.8161 7.28936 16.5741 108
cluster_6.pdb ( medoid) 11.336 6.35143 12.3496 72
cluster_7.pdb ( medoid) 9.43212 6.36124 10.7963 60
cluster_8.pdb ( medoid) 8.81865 7.59754 14.7638 67
cluster_9.pdb ( medoid) 5.19154 7.12698 11.739 37
cluster_10.pdb ( medoid) 4.25613 6.8137 10.6009 29

 
Laboratory of Computational Biology, 2020