CABS-dock: 1507_2.deneme

Project name: 1507_2.deneme_sekans87

Status: done

submitted: 2025-08-02 19:15:06, status changed: 2025-08-04 11:19:06

Project settings

Protein sequence(s)	IRVFAIPPSFASIFLTKSTKLTCLVTDLTTYDSVTISWTRQNGEAVKTHTNISESHPNATFSAVGEASISEDDWNSGERFTCTVTHTDLPSPLKQTISRPKGVALHRPDVYLLPPAREQLNLRESATITCLVTGFSPADVFVQWMQRGQPLSPEKYVTSAPMPEPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKSTIRVFAIPPSFASIFLTKSTKLTCLVTDLTTYDSVTISWTRQNGEAVKTHTNISESHPNATFSAVGEASISEDDWNSGERFTCTVTHTDLPSPLKQTISRPKGVALHRPDVYLLPPAREQLNLRESATITCLVTGFSPADVFVQWMQRGQPLSPEKYVTSAPMPEPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKST input pdb
Peptide sequence	QSAGITASSVISQR
Simulation mc cycles	200
Peptide secondary structure psipred	CCCCCCHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	17.295	8.96212	39.8073	155
cluster_2.pdb ( medoid)	15.6917	11.8534	53.1068	186
cluster_3.pdb ( medoid)	14.5914	9.04644	54.396	132
cluster_4.pdb ( medoid)	11.2945	13.2808	44.0505	150
cluster_5.pdb ( medoid)	10.676	8.24282	19.7182	88
cluster_6.pdb ( medoid)	10.2795	6.51784	18.7959	67
cluster_7.pdb ( medoid)	7.54125	7.82363	19.9084	59
cluster_8.pdb ( medoid)	5.12636	10.5338	23.4543	54
cluster_9.pdb ( medoid)	3.1468	21.2915	65.8058	67
cluster_10.pdb ( medoid)	1.1888	25.2355	56.4185	30