CABS-dock: GGA3

Project name: GGA3_VHS-7

Status: done

submitted: 2026-07-09 12:02:01, status changed: 2026-07-09 14:27:44

Project settings

Protein sequence(s)	ESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQSDPPIPVDRTLI input pdb
Peptide sequence	YWFDMSI
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	54.6219	3.16723	11.825	173
cluster_2.pdb ( medoid)	31.2855	3.57993	10.2581	112
cluster_3.pdb ( medoid)	29.1863	5.34498	16.5325	156
cluster_4.pdb ( medoid)	19.9431	8.57441	22.1975	171
cluster_5.pdb ( medoid)	15.8265	10.3624	26.5251	164
cluster_6.pdb ( medoid)	14.2561	4.91019	13.1539	70
cluster_7.pdb ( medoid)	10.4554	5.26046	13.1062	55
cluster_8.pdb ( medoid)	6.78768	8.10291	21.328	55
cluster_9.pdb ( medoid)	3.7917	7.64829	15.3507	29
cluster_10.pdb ( medoid)	2.25916	6.63965	10.8704	15