CABS-dock: 800c43c973f2c75

Project name: 800c43c973f2c75

Status: done

submitted: 2026-07-08 10:27:20, status changed: 2026-07-08 14:27:11

Project settings

Protein sequence(s)	VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSSVPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLAPSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK input pdb
Peptide sequence	VQPYGSNDA
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.8415	3.74526	22.4587	123
cluster_2.pdb ( medoid)	18.7095	6.84143	40.273	128
cluster_3.pdb ( medoid)	14.1872	9.09267	26.0585	129
cluster_4.pdb ( medoid)	9.85759	9.43436	37.7518	93
cluster_5.pdb ( medoid)	9.8195	11.2022	35.5709	110
cluster_6.pdb ( medoid)	9.49386	11.0598	28.0437	105
cluster_7.pdb ( medoid)	6.91206	13.5994	34.3422	94
cluster_8.pdb ( medoid)	6.63674	11.1501	24.0834	74
cluster_9.pdb ( medoid)	5.10802	17.4236	58.8378	89
cluster_10.pdb ( medoid)	3.07495	17.8865	48.6953	55