CABS-dock: COOP_PEPT189

Project name: COOP_PEPT189_FAK

Status: done

submitted: 2026-07-23 11:01:00, status changed: 2026-07-23 16:04:50

Project settings

Protein sequence(s)	STRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKLQ input pdb
Peptide sequence	DDGRIGPR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	28.5959	3.77677	26.6351	108
cluster_2.pdb ( medoid)	28.583	7.83683	36.175	224
cluster_3.pdb ( medoid)	18.4427	6.66932	33.9124	123
cluster_4.pdb ( medoid)	14.0522	10.034	27.2259	141
cluster_5.pdb ( medoid)	13.8116	3.62015	16.0071	50
cluster_6.pdb ( medoid)	13.1447	10.5746	36.6795	139
cluster_7.pdb ( medoid)	8.19185	6.95814	25.6535	57
cluster_8.pdb ( medoid)	6.2636	12.2932	34.1264	77
cluster_9.pdb ( medoid)	3.51422	14.2279	34.8223	50
cluster_10.pdb ( medoid)	3.3213	9.3337	26.9332	31