Project name: Docking project

Status: done

submitted: 2023-11-28 04:33:19, status changed: 2023-11-28 16:58:13

Project settings
Peptide sequence SFGDGFADF
Simulation mc cycles50
Peptide secondary structure CCCCHHHHC
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 60.1773 1.66176 3.08423 100
cluster_2.pdb ( medoid) 51.6478 1.93619 4.38932 100
cluster_3.pdb ( medoid) 32.8294 4.08171 13.2795 134
cluster_4.pdb ( medoid) 21.2405 9.98095 22.3119 212
cluster_5.pdb ( medoid) 9.43457 9.43339 21.3384 89
cluster_6.pdb ( medoid) 8.26745 11.128 45.5439 92
cluster_7.pdb ( medoid) 5.83341 8.39989 15.5147 49
cluster_8.pdb ( medoid) 5.47978 9.48944 20.3771 52
cluster_9.pdb ( medoid) 5.31491 14.1112 42.1783 75
cluster_10.pdb ( medoid) 1.74593 22.3377 54.0514 39