CABS-dock: 8177d8773985b9d

Project name: 8177d8773985b9d

Status: done

submitted: 2026-06-24 01:49:18, status changed: 2026-06-24 13:34:42

Project settings

Protein sequence(s)	MAELQEVQITEEKPLLPGQTPEAAKEAELAARILLDQGQTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPGHTMEVSC input pdb
Peptide sequence	VKKEAELDKYLE
Simulation mc cycles	50
Peptide secondary structure psipred	CCCHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	32.8561	5.23495	21.3501	172
cluster_2.pdb ( medoid)	18.5494	6.52314	46.7993	121
cluster_3.pdb ( medoid)	16.5084	5.14889	20.7646	85
cluster_4.pdb ( medoid)	15.2022	9.07765	44.7447	138
cluster_5.pdb ( medoid)	12.6231	9.42715	31.819	119
cluster_6.pdb ( medoid)	7.8256	8.68943	20.4922	68
cluster_7.pdb ( medoid)	6.5717	12.7821	40.3875	84
cluster_8.pdb ( medoid)	4.67293	12.1979	28.5777	57
cluster_9.pdb ( medoid)	4.54136	20.9188	46.8691	95
cluster_10.pdb ( medoid)	4.41828	13.8063	29.8351	61