CABS-dock: 82f1e3c42c3b465

Project name: 82f1e3c42c3b465

Status: done

submitted: 2026-01-22 13:06:28, status changed: 2026-01-22 13:41:29

Project settings

Protein sequence(s)	PEITLIIFGVIAGVIGTILLISYGIRRL input pdb
Peptide sequence	ATFDKNDEDSPIVMHQEDGST
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	18.2427	8.38693	35.0543	153
cluster_2.pdb ( medoid)	18.0617	4.81683	20.4152	87
cluster_3.pdb ( medoid)	13.2616	10.9338	29.5021	145
cluster_4.pdb ( medoid)	13.147	7.07388	29.0795	93
cluster_5.pdb ( medoid)	10.3027	12.8121	28.2755	132
cluster_6.pdb ( medoid)	8.41668	12.8317	30.3504	108
cluster_7.pdb ( medoid)	7.71084	10.7641	28.9057	83
cluster_8.pdb ( medoid)	5.65266	14.1526	31.4112	80
cluster_9.pdb ( medoid)	5.49028	7.46774	24.5801	41
cluster_10.pdb ( medoid)	4.09233	19.0601	44.177	78