CABS-dock: 83ead67c2a0706c

Project name: 83ead67c2a0706c

Status: done

submitted: 2026-02-26 08:47:38, status changed: 2026-02-26 11:49:33

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	VQVFGSNCY
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.8139	2.536	13.7101	68
cluster_2.pdb ( medoid)	25.7439	5.47702	26.5378	141
cluster_3.pdb ( medoid)	20.4965	4.24463	13.5647	87
cluster_4.pdb ( medoid)	20.1841	6.34162	17.7875	128
cluster_5.pdb ( medoid)	15.8966	8.74399	19.2138	139
cluster_6.pdb ( medoid)	13.9874	12.7972	33.1366	179
cluster_7.pdb ( medoid)	13.5064	3.47983	12.3166	47
cluster_8.pdb ( medoid)	11.1309	10.0621	20.7732	112
cluster_9.pdb ( medoid)	10.5285	7.2185	20.8109	76
cluster_10.pdb ( medoid)	3.7696	6.10144	18.988	23