CABS-dock: 83fd4efc35ebb1d

Project name: 83fd4efc35ebb1d

Status: done

submitted: 2026-04-12 21:24:06, status changed: 2026-04-13 07:13:30

Project settings

Protein sequence(s)	MKYSTLVSIAAFISTSLAATVPDEHYSTLSPSAKIPSGASTDFSGTFGIQVVTVESASALSTDTATSTLTRNDNKKEATPVAQITDGQVQHQTTGGVSAIKQISDGQVQHQTNAAQPIAQISDGQIQHQTTAKATATPVQQINDGQIQHQTTVQPVAQISDGQIQHQTAKATATPVQQIGDGQIQHQTTVQPVAQISDGQIQHQTVKASATPVQQIGDGQIQHQTTAAAATTASAVKQINDGQIQHQTTTAENVAKAQSDGQAIATGSPSSNSTLSDDDDLSSTIPKACSSANNLEMTLHDSVLKDTHERWGAIVANHQFQFDGPIPQAGTIYSAGWSIKDGYLYLGDSNIFYQCLSGDFYNLYDENVAKQCSAVKLSVIEFVNC input pdb
Peptide sequence	CGWVVVVKQYLLYSHK
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEEEEEEEEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	51.1206	1.13457	3.84494	58
cluster_2.pdb ( medoid)	15.6154	6.40394	13.3219	100
cluster_3.pdb ( medoid)	14.1726	7.19699	19.3323	102
cluster_4.pdb ( medoid)	13.1963	5.83498	31.2974	77
cluster_5.pdb ( medoid)	10.8317	12.925	38.1989	140
cluster_6.pdb ( medoid)	8.90265	6.73957	19.6556	60
cluster_7.pdb ( medoid)	7.82548	6.00602	40.9847	47
cluster_8.pdb ( medoid)	6.70039	7.90999	40.8133	53
cluster_9.pdb ( medoid)	2.37115	15.1825	39.9348	36
cluster_10.pdb ( medoid)	2.27254	11.881	22.771	27