CABS-dock: 8472967bfe9f2b7

Project name: 8472967bfe9f2b7

Status: done

submitted: 2026-03-12 15:23:15, status changed: 2026-03-13 00:05:37

Project settings

Protein sequence(s)	MAEGGASKGGGEEPGKLPEPAEEESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGSERRPKGKTLQKRKPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKNVAQPPASSQGRQEAESQPCTSTLPREVGGGHGCTSPPFPQEARAEISERSGRSPQEASSTKSSIAPEEQSKKGPSVQKRKKT input pdb
Peptide sequence	ISRAGNAGELVSPLLLPPTRRRRR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	16.2385	6.95878	31.097	113
cluster_2.pdb ( medoid)	15.1857	13.6971	32.6513	208
cluster_3.pdb ( medoid)	12.6771	6.46837	30.5665	82
cluster_4.pdb ( medoid)	6.30653	14.4295	33.4221	91
cluster_5.pdb ( medoid)	6.29597	16.3597	38.0839	103
cluster_6.pdb ( medoid)	6.17806	6.31266	26.9921	39
cluster_7.pdb ( medoid)	4.83188	14.6941	39.8997	71
cluster_8.pdb ( medoid)	4.75365	15.9877	49.6958	76
cluster_9.pdb ( medoid)	3.69575	23.27	51.8296	86
cluster_10.pdb ( medoid)	1.64519	18.8428	35.5785	31