CABS-dock: 84c9498a0bb66cf

Project name: 84c9498a0bb66cf

Status: done

submitted: 2026-01-22 13:21:26, status changed: 2026-01-22 16:53:22

Project settings

Protein sequence(s)	GSLFQLKRETDDLEQWISSEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIIGQERVDNVNAFIERLLIDAGHSEAATTIAEWKDGLNEMWADLLLELIDDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPHRVHTAFERELHLLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACA input pdb
Peptide sequence	MATPSPTTTSVPEDEKVEES
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.8626	5.74342	32.4499	183
cluster_2.pdb ( medoid)	25.4427	4.32344	34.0183	110
cluster_3.pdb ( medoid)	19.6206	4.02638	10.1135	79
cluster_4.pdb ( medoid)	16.6082	8.42955	26.7037	140
cluster_5.pdb ( medoid)	10.451	6.60225	18.4336	69
cluster_6.pdb ( medoid)	8.38718	15.2614	43.4824	128
cluster_7.pdb ( medoid)	5.81539	14.9603	29.9531	87
cluster_8.pdb ( medoid)	5.70806	13.8401	37.9024	79
cluster_9.pdb ( medoid)	1.85288	15.6513	30.9246	29
cluster_10.pdb ( medoid)	1.49985	22.0023	41.516	33