CABS-dock: BLIND_R1_CANARY

Project name: BLIND_R1_CANARY_NATIVE

Status: done

submitted: 2026-07-23 09:07:14, status changed: 2026-07-23 13:47:55

Project settings

Protein sequence(s)	KRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSK input pdb
Peptide sequence	SYSYDAPSDFINFSS
Simulation mc cycles	50
Peptide secondary structure	CCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	48.8894	2.84315	31.0223	139
cluster_2.pdb ( medoid)	30.0905	5.25082	29.9421	158
cluster_3.pdb ( medoid)	21.4658	4.23931	10.1148	91
cluster_4.pdb ( medoid)	20.7506	3.71074	23.1904	77
cluster_5.pdb ( medoid)	13.6467	5.86221	29.1375	80
cluster_6.pdb ( medoid)	12.5903	5.48042	10.0519	69
cluster_7.pdb ( medoid)	10.2514	13.5592	34.5378	139
cluster_8.pdb ( medoid)	9.95559	11.25	49.5951	112
cluster_9.pdb ( medoid)	5.07439	11.627	37.8325	59
cluster_10.pdb ( medoid)	4.61054	16.484	34.948	76