CABS-dock: 8512d44a3882fcc

Project name: 8512d44a3882fcc

Status: done

submitted: 2026-07-16 08:47:48, status changed: 2026-07-16 14:44:28

Project settings

Protein sequence(s)	MANSEKDVSVINGIQTTLSQLSLYKGRVDGLFGKGCRDAVIHMVNVVYPGKVMKYPENNYEAKSVYTFLQTVLAQVGLYTIAIDGKWGNGSATAFNGLVDQYRTASTTQGGDQPVHLTEAQFKAMLPSANWDKVPVYLSAINEAMEVFDITTPLRKAHFMAQVLHETANLKYSEEIASGKAYEGRADLGNTKPGDGPLFKGRGLLQLTGRDNYLKCQTYLRQRLNDPRFDITSDVTKASQLSTNPLYAALASGYFWHSIKPKLNATADKDDIYWCSVYVNGYAKQTHPYYPDRDKEPNHMKERVQMLSVTKKAFGLI input pdb
Peptide sequence	VGGQAGAHGAEAL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.4568	5.32895	32.2587	125
cluster_2.pdb ( medoid)	22.6319	7.02549	30.3418	159
cluster_3.pdb ( medoid)	17.5211	8.27574	46.2922	145
cluster_4.pdb ( medoid)	12.8425	8.95463	22.9449	115
cluster_5.pdb ( medoid)	11.3509	6.60739	40.8343	75
cluster_6.pdb ( medoid)	10.3095	10.3788	30.3435	107
cluster_7.pdb ( medoid)	7.53605	12.4734	34.1846	94
cluster_8.pdb ( medoid)	6.6335	11.3062	39.1858	75
cluster_9.pdb ( medoid)	5.29535	12.4638	30.5177	66
cluster_10.pdb ( medoid)	5.06953	7.69302	16.9232	39