CABS-dock: 851dda61f911ca3

Project name: 851dda61f911ca3

Status: done

submitted: 2025-12-31 16:02:17, status changed: 2025-12-31 18:43:59

Project settings

Protein sequence(s)	APYGARMPFGGQVPLGAPPPFPTWPGCPQPPPLHAWQAGTPPPPSPQPAAFPQSLPFPQSPAFPTASPAPPQSPGLQPLIIHHAQMVQLGLNNHMWNQRGSQAPEDKTQEAE input pdb
Peptide sequence	RVIVQVGSNCFR
Simulation mc cycles	50
Peptide secondary structure psipred	CEEEEECCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.6693	6.12607	28.23	145
cluster_2.pdb ( medoid)	20.8364	6.57503	26.809	137
cluster_3.pdb ( medoid)	18.0712	7.6918	27.848	139
cluster_4.pdb ( medoid)	15.9324	5.08399	22.7031	81
cluster_5.pdb ( medoid)	13.3164	11.2643	26.9363	150
cluster_6.pdb ( medoid)	8.33517	9.47791	26.9697	79
cluster_7.pdb ( medoid)	7.51709	8.91303	20.6758	67
cluster_8.pdb ( medoid)	6.18271	12.9393	26.9569	80
cluster_9.pdb ( medoid)	5.03198	13.5136	28.0792	68
cluster_10.pdb ( medoid)	3.67154	14.7077	31.3309	54