CABS-dock: PEPTIDE12

Project name: PEPTIDE12

Status: done

submitted: 2025-07-02 09:36:34, status changed: 2025-07-02 14:02:07

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	KGFF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	26.0393	4.4164	22.326	115
cluster_2.pdb ( medoid)	18.4137	7.16856	27.0439	132
cluster_3.pdb ( medoid)	17.9214	11.383	41.5402	204
cluster_4.pdb ( medoid)	17.1516	9.38688	33.5252	161
cluster_5.pdb ( medoid)	11.711	4.09871	9.39246	48
cluster_6.pdb ( medoid)	10.4077	6.34143	25.1289	66
cluster_7.pdb ( medoid)	8.07591	6.9342	23.4366	56
cluster_8.pdb ( medoid)	7.9095	9.86156	28.4033	78
cluster_9.pdb ( medoid)	5.96223	12.4115	31.5371	74
cluster_10.pdb ( medoid)	4.99937	13.2017	39.2305	66