Project name: 10_SRC_RUTU

Status: done

submitted: 2023-11-27 16:06:10, status changed: 2023-11-28 02:55:35

Project settings
Protein sequence(s) TFVALYDYESRTETDLSFKKGERLQIVNNTEEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSKHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQP input pdb
Peptide sequence RWLLRLLLGY
Simulation mc cycles50
Peptide secondary structure psipred CHHHHHHHCC
Contact information
273:A 295:A 340:A 341:A 404:A
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 27.2263 4.81153 29.1611 131
cluster_2.pdb ( medoid) 22.9856 4.48107 9.95056 103
cluster_3.pdb ( medoid) 22.8751 4.76501 38.8088 109
cluster_4.pdb ( medoid) 14.9541 6.0853 24.7622 91
cluster_5.pdb ( medoid) 14.0085 8.63764 27.7859 121
cluster_6.pdb ( medoid) 12.4772 7.69401 32.1779 96
cluster_7.pdb ( medoid) 11.2567 14.7467 43.9223 166
cluster_8.pdb ( medoid) 8.46528 10.2773 33.1504 87
cluster_9.pdb ( medoid) 7.52673 7.70587 23.2956 58
cluster_10.pdb ( medoid) 2.9822 12.7423 27.1999 38