CABS-dock: 868a0a7bf213e5a

Project name: 868a0a7bf213e5a

Status: done

submitted: 2026-01-23 12:03:24, status changed: 2026-01-23 18:09:36

Project settings

Protein sequence(s)	ITKAANITKPGCPKQCGNVTVPYPFGIGSGCALDPMFEIDCNVTTPFIGNIQIYDISDAEMRISNFINTKCYSQTGVLIQDIPSWITLGTKSPYTFSTLNRFIVVGCDDGAIVSGNNFANGCPSLCTSTNDIVKGKCMGFGCCQITIPKGLKFFNTTMVTTRNHSLIWSFNPCGHSFLGEASRFEFQGIEDLSDVNFANKIRNNVPIVLDWAIGNLSCVEARKSNDYACLNNSQCVDSDTSLGGYRCSCNSGYIGNPYIGSGCQDIDECADPNTNSCEKICTNIPGSYNCSCPEGYTGDGRKNGRGCIAPN input pdb
Peptide sequence	DKVVQLNANTHLKIDNFKADDFGTM
Simulation mc cycles	50
Peptide secondary structure psipred	CCCEEECCCCCCCCCCEECCCCCCC

Re-submit project

Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	25.4182	4.28826	51.9023	109
cluster_2.pdb ( medoid)	20.3484	7.81387	29.5875	159
cluster_3.pdb ( medoid)	14.5021	6.96453	16.2245	101
cluster_4.pdb ( medoid)	14.2509	10.666	48.9438	152
cluster_5.pdb ( medoid)	5.66645	9.35329	22.3714	53
cluster_6.pdb ( medoid)	4.78133	14.222	28.5466	68
cluster_7.pdb ( medoid)	4.27738	9.11774	22.0127	39
cluster_8.pdb ( medoid)	3.65335	10.6751	23.8262	39
cluster_9.pdb ( medoid)	3.36987	15.1341	41.0944	51
cluster_10.pdb ( medoid)	2.91944	9.93342	36.194	29