CABS-dock: PEPTIDE32

Project name: PEPTIDE32

Status: done

submitted: 2025-07-02 11:52:40, status changed: 2025-07-02 15:37:32

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	KGFFF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.7088	5.56756	35.1533	132
cluster_2.pdb ( medoid)	18.4236	10.53	42.6611	194
cluster_3.pdb ( medoid)	13.5759	6.92403	18.0161	94
cluster_4.pdb ( medoid)	13.4298	7.4461	25.741	100
cluster_5.pdb ( medoid)	11.8721	6.99121	20.7682	83
cluster_6.pdb ( medoid)	11.5118	2.95349	11.2857	34
cluster_7.pdb ( medoid)	9.27188	10.5696	30.1337	98
cluster_8.pdb ( medoid)	8.04686	11.0602	29.9456	89
cluster_9.pdb ( medoid)	7.14306	12.5996	35.8026	90
cluster_10.pdb ( medoid)	6.16915	13.9403	40.6319	86