CABS-dock: 884abbea0f8de3f

Project name: 884abbea0f8de3f

Status: done

submitted: 2026-06-24 14:56:22, status changed: 2026-06-24 16:36:01

Project settings

Protein sequence(s)	PPGPPGPPGQRGERGFPGPPGPPGPPGPPGPPGPPGQRGERGFPGPPGPPGPPPGPPGPPGQRGERGFPGPPGPPGPPG input pdb
Peptide sequence	MRAPGCGRLVLPLLLLAAAALAEGDAKGLK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	16.2479	11.1399	33.3325	181
cluster_2.pdb ( medoid)	12.7405	10.3607	32.3187	132
cluster_3.pdb ( medoid)	11.7002	11.0254	35.0911	129
cluster_4.pdb ( medoid)	10.2286	13.296	29.8457	136
cluster_5.pdb ( medoid)	6.89322	11.7507	26.5433	81
cluster_6.pdb ( medoid)	5.85933	15.5308	31.8878	91
cluster_7.pdb ( medoid)	5.31945	13.5352	27.2115	72
cluster_8.pdb ( medoid)	4.64204	15.0796	23.3953	70
cluster_9.pdb ( medoid)	3.57509	14.8248	26.563	53
cluster_10.pdb ( medoid)	2.91198	18.8875	39.48	55