CABS-dock: 88becfdadc9a786

Project name: 88becfdadc9a786

Status: done

submitted: 2026-06-23 11:07:52, status changed: 2026-06-23 13:48:36

Project settings

Protein sequence(s)	MVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGATMVLSSDPPGPAAYRISDSSFVQCGSNCSMIIDGDVARGHLRDLEGAT input pdb
Peptide sequence	HRHRHVQLFGYRHRHRH
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.0896	3.58928	14.7999	108
cluster_2.pdb ( medoid)	24.0163	8.1195	26.2598	195
cluster_3.pdb ( medoid)	21.4953	6.46653	25.1134	139
cluster_4.pdb ( medoid)	19.5172	7.01946	21.0739	137
cluster_5.pdb ( medoid)	12.0953	8.01965	21.797	97
cluster_6.pdb ( medoid)	8.99817	6.11236	21.8117	55
cluster_7.pdb ( medoid)	8.78256	13.8912	27.8965	122
cluster_8.pdb ( medoid)	5.35378	10.8335	27.42	58
cluster_9.pdb ( medoid)	3.99543	15.2674	30.5124	61
cluster_10.pdb ( medoid)	2.79975	10.0009	26.2762	28