CABS-dock: cpca03

Project name: cpca03

Status: done

submitted: 2026-06-24 06:10:58, status changed: 2026-06-24 11:45:17

Project settings

Protein sequence(s)	WRYGGDPPWPRVSPACAGRFQSPVDIRPQLAAFSPALRPLELLGFQLPPLPELRLRNNGHSVQLTLPPGLEMALGPGREYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLSTAFARVDEALGRPGGLAVLAAFLEEGPEENSAYEQLLSRLEEIAEEGSETQVPGLDISALLPSDFSRYFQYEGSLTTPPCAQGVIWTVFNQTVMLSAKQLHTLSDDTLWGPGDSRLQLNFRATQPLNGRVIEASFP input pdb
Peptide sequence	IVGEGGKATLGG
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	58.0471	3.01479	12.7265	175
cluster_2.pdb ( medoid)	51.2781	1.96965	5.56793	101
cluster_3.pdb ( medoid)	20.6031	6.50387	35.4023	134
cluster_4.pdb ( medoid)	18.3566	4.6305	17.2733	85
cluster_5.pdb ( medoid)	9.39442	13.3058	36.9814	125
cluster_6.pdb ( medoid)	9.28554	8.61555	32.3507	80
cluster_7.pdb ( medoid)	8.2654	14.3974	38.302	119
cluster_8.pdb ( medoid)	8.0487	8.8213	28.1516	71
cluster_9.pdb ( medoid)	4.47929	15.4042	43.213	69
cluster_10.pdb ( medoid)	2.22894	18.3944	37.5897	41