CABS-dock: 1507_1.deneme

Project name: 1507_1.deneme_sekans85

Status: done

submitted: 2025-08-02 19:11:17, status changed: 2025-08-04 11:45:11

Project settings

Protein sequence(s)	IRVFAIPPSFASIFLTKSTKLTCLVTDLTTYDSVTISWTRQNGEAVKTHTNISESHPNATFSAVGEASISEDDWNSGERFTCTVTHTDLPSPLKQTISRPKGVALHRPDVYLLPPAREQLNLRESATITCLVTGFSPADVFVQWMQRGQPLSPEKYVTSAPMPEPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKSTIRVFAIPPSFASIFLTKSTKLTCLVTDLTTYDSVTISWTRQNGEAVKTHTNISESHPNATFSAVGEASISEDDWNSGERFTCTVTHTDLPSPLKQTISRPKGVALHRPDVYLLPPAREQLNLRESATITCLVTGFSPADVFVQWMQRGQPLSPEKYVTSAPMPEPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKST input pdb
Peptide sequence	ITASSVISQRTQQTS
Simulation mc cycles	200
Peptide secondary structure psipred	CCHHHHHCHHHCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.1677	6.3882	14.0716	148
cluster_2.pdb ( medoid)	17.2085	7.55441	21.6716	130
cluster_3.pdb ( medoid)	16.2103	6.66244	21.9717	108
cluster_4.pdb ( medoid)	12.2835	9.525	26.6728	117
cluster_5.pdb ( medoid)	11.4857	11.9279	37.9385	137
cluster_6.pdb ( medoid)	11.1215	9.44116	20.5085	105
cluster_7.pdb ( medoid)	5.67126	12.1666	29.5445	69
cluster_8.pdb ( medoid)	5.49206	14.3844	43.7842	79
cluster_9.pdb ( medoid)	5.47444	12.056	36.9555	66
cluster_10.pdb ( medoid)	2.91049	14.087	26.1287	41