CABS-dock: EPFWPGLFAK

Project name: EPFWPGLFAK_ıl6

Status: done

submitted: 2025-03-09 19:11:46, status changed: 2025-03-09 22:47:42

Project settings

Protein sequence(s)	MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM input pdb
Peptide sequence	EPFWPGLFAK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.5656	9.70721	25.9626	287
cluster_2.pdb ( medoid)	28.9504	1.20897	7.23607	35
cluster_3.pdb ( medoid)	18.5455	7.11761	18.6125	132
cluster_4.pdb ( medoid)	16.2303	8.25617	27.3055	134
cluster_5.pdb ( medoid)	10.821	10.2578	28.1205	111
cluster_6.pdb ( medoid)	10.5412	3.51002	15.0221	37
cluster_7.pdb ( medoid)	4.91586	5.69585	17.9212	28
cluster_8.pdb ( medoid)	4.78353	14.4245	31.1035	69
cluster_9.pdb ( medoid)	4.5789	6.77018	18.5271	31
cluster_10.pdb ( medoid)	3.08316	11.6763	26.0667	36