CABS-dock: 251125 PD_CL2

Project name: 251125 PD_CL2_7

Status: done

submitted: 2025-11-25 02:12:30, status changed: 2025-11-25 06:47:58

Project settings

Protein sequence(s)	AFTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPEL input pdb
Peptide sequence	WHRSYYTWNLNT
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEECEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	44.5473	1.88564	4.9854	84
cluster_2.pdb ( medoid)	35.6198	3.00394	25.0979	107
cluster_3.pdb ( medoid)	27.8984	6.12938	15.0188	171
cluster_4.pdb ( medoid)	19.8972	3.31705	14.4548	66
cluster_5.pdb ( medoid)	14.4002	8.611	23.1627	124
cluster_6.pdb ( medoid)	13.053	8.58038	25.8607	112
cluster_7.pdb ( medoid)	11.2231	9.35568	20.6901	105
cluster_8.pdb ( medoid)	6.29602	9.68866	24.0558	61
cluster_9.pdb ( medoid)	5.72467	9.25818	19.0222	53
cluster_10.pdb ( medoid)	1.62816	10.4412	21.5356	17