CABS-dock: pep11374

Project name: pep11374

Status: done

submitted: 2026-02-14 06:42:07, status changed: 2026-02-14 17:28:46

Project settings

Protein sequence(s)	GFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ input pdb
Peptide sequence	MNFGYPSINP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	37.3911	2.8349	28.2534	106
cluster_2.pdb ( medoid)	34.9402	6.29647	32.3009	220
cluster_3.pdb ( medoid)	34.8568	3.27053	18.104	114
cluster_4.pdb ( medoid)	30.4395	1.97112	24.9073	60
cluster_5.pdb ( medoid)	23.6405	2.87641	12.5701	68
cluster_6.pdb ( medoid)	17.9972	7.66785	45.3412	138
cluster_7.pdb ( medoid)	10.9132	6.5975	20.3114	72
cluster_8.pdb ( medoid)	6.12634	14.0377	35.2585	86
cluster_9.pdb ( medoid)	4.98769	13.4331	38.1414	67
cluster_10.pdb ( medoid)	4.76626	14.4768	33.5071	69