CABS-dock: 89d725cca0d6a23

Project name: 89d725cca0d6a23

Status: done

submitted: 2026-01-22 12:57:23, status changed: 2026-01-22 19:33:09

Project settings

Protein sequence(s)	VYVELQELVMDEKNQELRWMEAARWVQLEENLGENGAWGRPHLSHLTFWSLLELRRVFTKGTVLLDLQETSLAGVANQLLDRFIFEDQIRPQDREELLRALLLKHSHAGELEALGGVKPAVLTRPSQPLLPQHSSLETQLFCEEKIPPDSEATLVLVGRADFLEQPVLGFVRLQEAAELEAVELPVPIRFLFVLLGPEAPHIDYTQLGRAAATLMSERVFRIDAYMAQSRGELLHSLEGFLDCSLVLPPTDAPSEQALLSLVPVQRELLRRRYQSS input pdb
Peptide sequence	ASSDGGVRAAKETGV
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCHHHHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	23.9568	5.80211	13.5646	139
cluster_2.pdb ( medoid)	20.4376	4.5015	14.961	92
cluster_3.pdb ( medoid)	17.2726	4.74739	24.6361	82
cluster_4.pdb ( medoid)	16.8265	9.03338	39.3977	152
cluster_5.pdb ( medoid)	15.774	6.71991	46.7097	106
cluster_6.pdb ( medoid)	15.2109	5.71959	23.9788	87
cluster_7.pdb ( medoid)	13.6616	4.17226	10.9619	57
cluster_8.pdb ( medoid)	12.6615	6.63428	16.4314	84
cluster_9.pdb ( medoid)	6.83124	18.4447	51.2862	126
cluster_10.pdb ( medoid)	5.02642	14.9212	35.2355	75