CABS-dock: PEPTIDE22

Project name: PEPTIDE22

Status: done

submitted: 2025-07-02 11:43:21, status changed: 2025-07-02 15:26:26

Project settings

Protein sequence(s)	EYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTN input pdb
Peptide sequence	FFYN
Simulation mc cycles	50
Peptide secondary structure psipred	CCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	31.6372	5.43664	21.6648	172
cluster_2.pdb ( medoid)	31.3147	3.92787	28.6113	123
cluster_3.pdb ( medoid)	18.1153	5.4098	14.5274	98
cluster_4.pdb ( medoid)	16.2066	10.613	32.9592	172
cluster_5.pdb ( medoid)	11.3877	6.32263	19.9335	72
cluster_6.pdb ( medoid)	11.0038	6.36141	14.3842	70
cluster_7.pdb ( medoid)	9.89446	8.59067	26.3158	85
cluster_8.pdb ( medoid)	8.62022	9.39652	31.2783	81
cluster_9.pdb ( medoid)	7.87274	11.5589	30.4	91
cluster_10.pdb ( medoid)	4.57636	7.86652	24.4591	36