CABS-dock: 8b4547e12a653f

Project name: 8b4547e12a653f

Status: done

submitted: 2026-03-14 04:34:09, status changed: 2026-03-14 10:19:53

Project settings

Protein sequence(s)	RMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIPISRSTSPTFNKQ input pdb
Peptide sequence	KIPKATPELGSSENSASSPPRFK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	24.5578	5.66011	21.2597	139
cluster_2.pdb ( medoid)	16.0956	9.56781	27.3055	154
cluster_3.pdb ( medoid)	14.0731	7.38996	28.2445	104
cluster_4.pdb ( medoid)	12.965	9.02428	25.4077	117
cluster_5.pdb ( medoid)	11.6743	11.9922	44.1817	140
cluster_6.pdb ( medoid)	7.74456	10.5881	25.6719	82
cluster_7.pdb ( medoid)	6.60899	13.4665	38.422	89
cluster_8.pdb ( medoid)	6.35045	17.3216	47.3324	110
cluster_9.pdb ( medoid)	3.24322	11.1001	24.6906	36
cluster_10.pdb ( medoid)	2.11965	13.6815	32.3466	29