CABS-dock: 8bc26b6a963e103

Project name: 8bc26b6a963e103

Status: done

submitted: 2026-07-27 05:43:28, status changed: 2026-07-27 10:21:46

Project settings

Protein sequence(s)	ETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR input pdb
Peptide sequence	YAYATFGF
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	48.8029	1.88513	13.8443	92
cluster_2.pdb ( medoid)	32.9972	4.36401	12.1665	144
cluster_3.pdb ( medoid)	32.6098	2.29993	9.5472	75
cluster_4.pdb ( medoid)	26.9206	3.30602	8.56348	89
cluster_5.pdb ( medoid)	24.1672	5.50333	17.7371	133
cluster_6.pdb ( medoid)	24.1056	4.52178	13.5623	109
cluster_7.pdb ( medoid)	17.2548	5.91141	13.0846	102
cluster_8.pdb ( medoid)	8.77775	15.1519	44.0705	133
cluster_9.pdb ( medoid)	8.09323	10.379	37.4211	84
cluster_10.pdb ( medoid)	3.21702	12.123	42.4708	39