CABS-dock: 8c6c32c07083f1e

Project name: 8c6c32c07083f1e

Status: done

submitted: 2025-07-02 10:56:51, status changed: 2025-07-02 21:24:46

Project settings

Protein sequence(s)	EEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLKHWEFDDTRPRFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTSPLTVEWRA input pdb
Peptide sequence	INTGFGNAL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	74.9953	3.48022	12.9033	261
cluster_2.pdb ( medoid)	62.0892	2.96348	5.40742	184
cluster_3.pdb ( medoid)	34.3766	2.47261	5.17285	85
cluster_4.pdb ( medoid)	9.00799	12.3224	40.781	111
cluster_5.pdb ( medoid)	7.99872	8.50136	27.8368	68
cluster_6.pdb ( medoid)	7.44963	13.5577	45.5203	101
cluster_7.pdb ( medoid)	6.63579	12.6586	41.9463	84
cluster_8.pdb ( medoid)	5.18063	13.1258	36.5379	68
cluster_9.pdb ( medoid)	2.55378	5.87365	22.2621	15
cluster_10.pdb ( medoid)	1.58057	14.5517	44.5886	23