CABS-dock: 8ca73433edb3455

Project name: 8ca73433edb3455

Status: done

submitted: 2025-12-31 16:38:35, status changed: 2025-12-31 19:07:09

Project settings

Protein sequence(s)	RLRGAVTRCEDGQLFITMEVQNNSVVIKCDGLYIIYLKGSFFQEVKIDLHFREDHNPISIPMLNDGRRIVFTVVASLAFKDKVYLTVNAPDTLCEHLQINDGELIVVQLTPGYC input pdb
Peptide sequence	CVKHTYPSGHKCCR
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	29.182	1.74765	10.0184	51
cluster_2.pdb ( medoid)	23.2191	6.93394	25.3892	161
cluster_3.pdb ( medoid)	19.3785	7.63733	25.5702	148
cluster_4.pdb ( medoid)	18.8763	3.01966	10.054	57
cluster_5.pdb ( medoid)	13.6233	9.24887	25.2072	126
cluster_6.pdb ( medoid)	12.4742	9.53971	19.0987	119
cluster_7.pdb ( medoid)	11.6296	7.65291	18.0681	89
cluster_8.pdb ( medoid)	11.2647	8.34464	32.5673	94
cluster_9.pdb ( medoid)	9.18226	12.5242	40.051	115
cluster_10.pdb ( medoid)	6.5229	6.13224	23.5223	40