CABS-dock: GLAEELHAA-new

Project name: GLAEELHAA-new

Status: done

submitted: 2025-07-02 06:04:38, status changed: 2025-07-02 18:45:51

Project settings

Protein sequence(s)	GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWMIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM input pdb
Peptide sequence	GLAEELHAA
Simulation mc cycles	50
Peptide secondary structure psipred	CHHHHHHCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	39.892	4.63753	12.724	185
cluster_2.pdb ( medoid)	37.2377	3.57165	8.59216	133
cluster_3.pdb ( medoid)	31.9453	3.88164	31.3385	124
cluster_4.pdb ( medoid)	21.837	8.70081	46.7316	190
cluster_5.pdb ( medoid)	13.9591	7.02053	34.317	98
cluster_6.pdb ( medoid)	13.6072	4.18896	8.85367	57
cluster_7.pdb ( medoid)	10.1028	6.33488	13.6988	64
cluster_8.pdb ( medoid)	4.94755	14.9569	50.3339	74
cluster_9.pdb ( medoid)	3.19629	9.69874	41.2326	31
cluster_10.pdb ( medoid)	2.87149	15.3231	54.2765	44