CABS-dock: MM19_1POZ no Ha binding

Project name: MM19_1POZ no Ha binding

Status: done

submitted: 2025-05-30 09:53:26, status changed: 2025-05-30 13:29:32

Project settings

Protein sequence(s)	AQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDV input pdb
Peptide sequence	WDSRGKDSYETSQL
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in 3Dmol (WebGL)

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	30.9237	4.13922	16.9593	128
cluster_2.pdb ( medoid)	23.9556	4.80054	10.4019	115
cluster_3.pdb ( medoid)	23.092	7.18864	17.9518	166
cluster_4.pdb ( medoid)	22.2725	4.80413	9.87542	107
cluster_5.pdb ( medoid)	19.6042	4.53985	9.01408	89
cluster_6.pdb ( medoid)	17.6227	6.46894	27.9241	114
cluster_7.pdb ( medoid)	13.4184	4.69506	9.7975	63
cluster_8.pdb ( medoid)	11.9696	9.02289	32.0213	108
cluster_9.pdb ( medoid)	9.829	7.32526	16.3893	72
cluster_10.pdb ( medoid)	4.58318	8.29118	31.1729	38