CABS-dock: 8e9c4662a14af38

Project name: 8e9c4662a14af38

Status: done

submitted: 2026-03-08 18:45:31, status changed: 2026-03-09 07:45:50

Project settings

Protein sequence(s)	MIKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSMGDTRPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA input pdb
Peptide sequence	DQNNVTIMANLHVHD
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCEEEEEECEECC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	47.6511	2.09859	5.86989	100
cluster_2.pdb ( medoid)	38.0345	2.41886	26.2992	92
cluster_3.pdb ( medoid)	36.1548	2.79354	24.0863	101
cluster_4.pdb ( medoid)	23.4643	8.26788	21.073	194
cluster_5.pdb ( medoid)	15.1899	10.7308	37.3584	163
cluster_6.pdb ( medoid)	11.0002	3.63628	6.55116	40
cluster_7.pdb ( medoid)	7.79367	10.6497	33.6135	83
cluster_8.pdb ( medoid)	7.02736	10.9572	26.5097	77
cluster_9.pdb ( medoid)	6.05572	12.0547	37.2063	73
cluster_10.pdb ( medoid)	4.26175	18.0677	36.239	77