CABS-dock: pep9678

Project name: pep9678

Status: done

submitted: 2026-02-14 06:41:10, status changed: 2026-02-14 17:27:59

Project settings

Protein sequence(s)	GFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQ input pdb
Peptide sequence	MNFHAFHINP
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCEECCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	42.2128	2.79536	14.2972	118
cluster_2.pdb ( medoid)	28.8079	2.77701	7.14097	80
cluster_3.pdb ( medoid)	26.5712	3.08605	9.69374	82
cluster_4.pdb ( medoid)	20.631	6.30121	22.5072	130
cluster_5.pdb ( medoid)	19.8372	8.21687	28.1544	163
cluster_6.pdb ( medoid)	13.3414	5.02197	16.2305	67
cluster_7.pdb ( medoid)	11.3904	9.13051	18.2171	104
cluster_8.pdb ( medoid)	9.63975	4.66817	10.0565	45
cluster_9.pdb ( medoid)	8.98342	16.5861	51.313	149
cluster_10.pdb ( medoid)	5.78717	10.7134	32.4349	62