CABS-dock: 917820633eb039c

Project name: 917820633eb039c

Status: done

submitted: 2026-07-16 14:02:17, status changed: 2026-07-16 16:34:53

Project settings

Protein sequence(s)	LTSSERIDKQIRYILDGISALRKETCNKSNMCENLNLPKMAEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM input pdb
Peptide sequence	TLRNDNSSRFGK
Simulation mc cycles	50
Peptide secondary structure psipred	CCCCCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

Download all files

Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	34.9728	7.09122	29.7747	248
cluster_2.pdb ( medoid)	31.8822	3.23064	15.4151	103
cluster_3.pdb ( medoid)	29.2859	5.25851	14.811	154
cluster_4.pdb ( medoid)	20.0007	1.84993	13.5168	37
cluster_5.pdb ( medoid)	14.9604	10.2938	33.2966	154
cluster_6.pdb ( medoid)	13.9808	6.2228	15.7785	87
cluster_7.pdb ( medoid)	12.3643	4.61004	9.15389	57
cluster_8.pdb ( medoid)	5.47138	13.1594	27.7122	72
cluster_9.pdb ( medoid)	5.20759	9.21732	23.2462	48
cluster_10.pdb ( medoid)	3.79166	10.5495	22.9985	40