CABS-dock: 8a9l

Project name: 8a9l_k84s

Status: done

submitted: 2025-10-20 11:14:10, status changed: 2025-10-21 00:33:35

Project settings

Protein sequence(s)	GKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQL input pdb
Peptide sequence	FLVWGCLRGSAIGECVVHGGPPSRH
Simulation mc cycles	50
Peptide secondary structure psipred	CCEEEEECCCCHHCHHHCCCCCCCC

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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.

Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).

Representative conformations

	model_1		Download
	model_2		Download
	model_3		Download
	model_4		Download
	model_5		Download
	model_6		Download
	model_7		Download
	model_8		Download
	model_9		Download
	model_10		Download

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Click the "View" button to load the contact map of appropriate model.

Representative conformations

Contact cutoff (Å)

	model_1	View
	model_2	View
	model_3	View
	model_4	View
	model_5	View
	model_6	View
	model_7	View
	model_8	View
	model_9	View
	model_10	View

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Receptor residue	Peptide residue

Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.

Trajectories

	replica_1		Download
	replica_2		Download
	replica_3		Download
	replica_4		Download
	replica_5		Download
	replica_6		Download
	replica_7		Download
	replica_8		Download
	replica_9		Download
	replica_10		Download

Selected model: model_1.pdb (most representative model of the best cluster) download the model

Details about clusters

cluster name	cluster density	average rmsd	max rmsd	number of elements
cluster_1.pdb ( medoid)	40.5548	2.56443	32.8529	104
cluster_2.pdb ( medoid)	35.3095	3.39852	25.8557	120
cluster_3.pdb ( medoid)	28.2322	3.86085	24.2227	109
cluster_4.pdb ( medoid)	23.1275	5.14538	29.5235	119
cluster_5.pdb ( medoid)	19.4898	5.1822	35.1886	101
cluster_6.pdb ( medoid)	16.1967	6.97674	24.9872	113
cluster_7.pdb ( medoid)	14.7895	7.30246	16.6876	108
cluster_8.pdb ( medoid)	13.5459	7.89907	27.3112	107
cluster_9.pdb ( medoid)	6.37474	10.5102	24.2513	67
cluster_10.pdb ( medoid)	2.50656	20.7456	42.3411	52